Platform.

The integrated imaging, microdissection, and fluidic system used in the Purensis data-generation workflow.

An integrated system.

Whole-slide imaging, AI-guided segmentation, laser microdissection, and automated fluidic collection combined in a single workflow. Each tissue region is captured with paired imaging, spatial coordinates, and downstream proteomic measurement.

Advanced Imaging System

Inverted Microscope System

Our imaging system provides high-quality tile-based acquisition with intelligent focus optimization:

  • Multi-tile scanning: Automated panoramic image acquisition across large tissue areas
  • Z-stack acquisition: Multiple focal planes captured for each tile
  • Intelligent focus selection: Scharr variance-based algorithm automatically identifies optimal focus plane
  • Multi-channel support: Brightfield, fluorescence, and other imaging modalities
  • High-precision stitching: Stitched panoramic images with coordinate metadata
Resolution: Up to 2048×1536 per tile
Pixel Precision: Dynamic calculation based on objective (e.g., 0.645 µm @ 10×)
Scan Area: Full slide coverage (tile-based)
Z-stack Multi-tile scanning with Z-stack acquisition
AI-powered cell segmentation and clustering

Integrated Image Analysis

Segmentation and AI-Augmented Annotation

Advanced image analysis tools for automated cell and region identification:

  • Deep learning segmentation: Pre-trained models for various cell types with customizable parameters
  • Interactive tuning: Real-time preview of segmentation results with adjustable thresholds
  • Clustering analysis: DBSCAN and K-Means algorithms group similar cells or regions
  • Polygon modification: Automated dilation, smoothing, and simplification tools
  • Manual refinement: Draw, edit, and merge annotations with precision measurement tools

Smart Analysis: Our unified analysis interface combines segmentation, clustering, and polygon modification in one streamlined workflow.

Precision Laser Microdissection

Automated Coordinate-Guided Cutting

Our laser system delivers micrometer-scale precision with intelligent automation:

  • Coordinate transformation: Automatic conversion from pixel annotations to stage coordinates
  • Laser offset calibration: Alignment workflow ensures cutting accuracy
  • Variable power control: Separate perimeter cutting and tissue release parameters, configurable per tissue type
  • Leadscrew positioning: Optimal Z-axis positioning during initialization
  • Path optimization: Efficient cutting patterns minimize tissue damage
Cutting Speed: 2.0 mm/s (configurable)
Precision: Micrometer-scale accuracy
Power Range: 1-100% (tissue-adaptive)
X: 12,450 um Y: 8,320 um Coordinate-guided precision cutting
Inlet pump Flow cell 96-well plate Automated fluidic transport and collection

Integrated Fluidics System

Automated Tissue Transport & Collection

Seamless integration of pumps and liquid handling for high-throughput sample processing:

  • Pump coordination: Synchronized inlet and outlet pumps for smooth tissue transport
  • Flow cell integration: Tissue flows through controlled microfluidic environment
  • Automated liquid handling: Automated collection into 96-well plates with well-specific targeting
  • Priming workflow: Automated system preparation ensures reliability
  • Safety features: Waste positioning and depth optimization prevent sample loss

High Throughput: Process and collect hundreds of tissue regions automatically, with each sample precisely tracked and stored.

Complete Automated Workflow

1

Live View & ROI Selection

Professional live view interface allows users to navigate tissue samples and define regions of interest

2

Automated Scanning

Multi-tile Z-stack acquisition across entire ROI with multi-channel support

3

Image Processing

Best focus selection using Scharr variance, followed by precision stitching with coordinate metadata generation

4

AI Analysis & Annotation

AI segmentation, clustering analysis, and manual annotation refinement in unified interface

5

Coordinate Export

Annotations automatically transformed from pixel coordinates to precise stage coordinates (µm)

6

Laser Alignment

Calibration workflow measures and compensates for laser-camera offset

7

Cut & Retrieve

Automated laser cutting along annotation paths with synchronized tissue transport

8

Well Collection

Automated liquid handler collects isolated tissues into specific wells for downstream analysis

Working with us?

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